- This workshop has passed.
Computational approaches in clinical epigenomics
March 1 @ 11:30 am - 12:30 pm
|
Speaker: Fei-Man Hsu, Ph.D.
Time: 11:30 AM – 12:30 PM (PST) |
 |
Abstract: DNA methylation signatures have high predictive value and could be used to predict health outcomes. Challenges remained in clinical studies such as the large population variations and the biopsy with mixed cell types which all contribute to DNA methylation dynamics. In this presentation I will introduce the computational approaches of clinical epigenomics with our recent research that applied targeted bisulfite sequencing (TBS-seq) to peripheral blood mononuclear cells (PBMCs) from 156 individuals before lung or kidney transplant in two medical centers to study the impact of cytomegalovirus (CMV) to the host epigenome. Cell type composition contributes most DNA methylation changes in PBMCs, and we resolved the mixed cell type issue with a reference-based cell type deconvolution method. Lastly, I will direct to a reference-free source-of-origin cell type classifier under development.
About the speaker: Dr. Fei-Man Hsu is a postdoctoral fellow at the Pellegrini lab in the Department of Molecular, Cell, and Developmental Biology at UCLA. With a Ph.D. from the University of Tokyo, Dr. Hsu specializes in bioinformatics. She holds a M.S. degree in Molecular and Cellular Biology, and a B.S. degree in Life Science from National Taiwan University.